Seto Inland Sea Carbon-neutral Research Center

Seto Inland Sea Carbon-neutral Research Center

Members

MIYAZAKI Seiichi OKAMURA Yoshiko TATE Shinichi
Director
Executive Vice President(Research)
MIYAZAKI Seiichi
Deputy Director
Professor
OKAMURA Yoshiko
Deputy Director
Professor
TATE Shinichi
Academic Papers
1. Fujii, S., Sakaguchi, R., Oki, H., Kawahara, K., Ohkubo, T., Fujiyoshi, S., Sambongi, Y. Contribution of a surface salt bridge to the protein stability of deep-sea Shewanella benthica cytochrome c '. J. Struct. Biol., 215, 108031 (2023).
2. Fujii, S., Kawai, K., Sambongi, Y., Wakai, S. Species-specific microorganisms in acid-tolerant Chironomus larvae reared in a neutral pH range under laboratory conditions: Single dataset analysis. Microb. Environ., 38, ME23029 (2023).
3. 浅枝 優花、藤井 創太郎、三本木 至宏、井川 武. 温泉ガエルの高温環境適用. 細胞, 55 (14), 64-66 (2023).
4. Hirano, K., Nakai, T., Nagai, T., Takada, K., Fujii, S., Sambongi, Y., Kondo, Y., Komeda, S., Nakaguchi, K., Yamaguchi, S., Maekawa, Y., Nakamura, T., Ooba, Y., Ohtsuka, S. Isolation and characterization of bacteria from the gut of a mesopelagic copepod Cephalophanes reflugens (Copepoda: Calanoida). J. Plankton Res., 46, 48-58 (2024).
5. Nakagawa, T., Miyamoto, T., Miki, S., Watanabe, K., Aki, T., Shidara, H., Yamashita, H. Preparation of egg-koji for developing a novel food. J. Biosci. Biotechnol., 135, 447-450 (2023).
6. Neri, K. D., Devanadera, M. K. P., Watanabe, K., Bennett, R. M., Arafiles, K. H. V., Aki, T., Dedeles, G. R. Fatty Acid Profiles of Oomycetes (Halophytophthora and Phytopythium spp.) from Philippine Mangroves. Lett. Appl. Microbiol., 76, ovad022 (2023).
7. Okamura, Y., Shimizu, R., Tominaga, Y., Maki, S., Aki, T., Matsumura, Y., Nakashimada, Y. Characterization of biogenic PbS quantum dots. Int. J. Mol. Sci., 24, 14149 (2023).
8. Maeda, H., Hirata, Y., Takahashi, H., Watanabe, K., Aki, T., Okamura, Y. Development of a transformation system for Nitratireductor sp. Mar. Biotechnol., 25, 644-651 (2023).
9. Toda, N., Inoue-Kashino, N., Fujita, H., Yoshida, R., Nimura-Matsune, K., Watanabe, S., Kuroda, A., Kashino, Y., Hirota, R. Cell morphology engineering enhances grazing resistance of Synechococcus elongatus PCC 7942 for non-sterile large-scale cultivation. J. Biosci. Bioeng. (2024).
10. Abdel-Hady, G. N., Tajima, T., Ikeda, T., Ishida, T., Funabashi, H., Kuroda, A., Hirota, R. A novel salt- and organic solventtolerant phosphite dehydrogenase from Cyanothece sp. ATCC 51142. Front. Bioeng. Biotechnol., 11, 1255582 (2023).
11. Seo, E. Y., Jung, D., Epstein, S. S., Zhang, W., Owen, J. S., Baba, H., Yamamoto, A., Harada, M., Nakashimada Y., Kato, S., Aoi Y., He, S. A targeted liquid cultivation method for previously uncultured non-colony forming microbes. Front. Microbiol., 14, 1194466(2023).
12. Honda, S., Yamazaki, Y., Mukada, T., Cheng, W., Chuba, M., Okazaki, Y., Saito, K., Oikawa, A., Maruyama, H., Wasaki, J., Wagatsuma, T., Tawaraya, K. Lipidome profiling of phosphorus deficiency-tolerant rice cultivars reveals remodeling of membrane lipids as a mechanism of low P tolerance. Plants, 12, 1365 (2023).
13. Long, H., Wasaki, J. Effects of phosphate solubilizing bacteria on soil phosphorus fractions and supply to maize seedlings grown in Lateritic red earths and Cinnamon soils. Microbes. Environ., 38(2), ME22075 (2023).
14. Staudinger, C., Renton, M., Leopold M., Wasaki, J., Veneklaas, E.J., de Britto Costa P., Boitt, G., Lambers, H. Interspecific facilitation of micronutrient uptake between cluster-root bearing trees and non-cluster rooted shrubs in a Banksia woodland. Plant. Soil (accepted for publication).
15. Wang, R., Funayama-Noguchi, S., Xiong, Z., Staudinger, C., Wasaki, J. Phosphorus absorption kinetics and exudation strategies of roots developed by three lupin species to tackle P deficiency. Planta (accepted for publication).
16. Asaoka, S., Yoshida, G., Ihara, I. Sustained release properties of cement-bonded composites with organic waste based anaerobic digestate as nutrient carriers for marine microalgae. Environ. Sci. Pollut. Res., 30, 56343-56352 (2023).
17. Asaoka, S., Endo, T., Ushihara, Y., Umehara, A., Yogi, C., Ohta, T., Hayakawa, S., Shutoh, N., Okuda, T. Spatial and temporal distribution of hydrogen sulfide and sulfur species in coastal marine sediments collected from Osaka Bay, Japan. Mar. Chem., 251, 104233 (2023).
18. Asaoka, S., Ishidu, T., Nakamoto, K. Effect of chemical composition of coal ash used to prepare granulated coal ash on the removal of hydrogen sulfide from water. Water Environ. Res., 95, e10916 (2023).
19. Kozuka, T., Oka, Y., Kohzuma, K., Kusaba, M. Cryptochromes suppress leaf senescence in response to blue light in Arabidopsis. Plant Physiol., 191, 2506-2518 (2023).
20. Fujii, K., Koyama, H., Kuniyoshi, H. Role of cell proliferation in strobilation of moon jellyfish Aurelia coerulea . Fish. Sci. (2023).
21. Sakai, Y., Muranaka, Y., Nakayama, H., Baba, K., Matsushita, K., Kuwahara, H., Kuniyoshi, H. The potential for egg-guarding care in females of the damselfish, Dascyllus reticulatus , in the absence of uniparental male care. J. Fish. Biol. (2023).
22. Koyama, H., Takahashi, Y., Matori, S., Kuniyoshi, H., Kurose, K. A newly identified enzyme from Japanese common squid Todarodes pacificus has the ability to biosynthesize D-aspartate. Arch. Biochem. Biophys., 750, 109809 (2023).
23. Misaki,Y., Hirashima,T., Fujii,K., Hirata,A., Hoshino,Y., Sumiyoshi,M., Masaki,S., Suzuki,T., Inada,K., Koyama,H., Kuniyoshi,H., Arakawa, K. 4-Methoxy-2,2'-bipyrrole-5-carbaldehyde, a biosynthetic intermediate of bipyrrole-containing natural products from the Streptomyces culture, arrests the strobilation of moon jellyfish Aurelia coerulea . Front. Mar. Sci., 10, 1198136 (2023).
24. Koyama, H., Kamiya, K., Sasaki, Y., Yamakawa, R., Kuniyoshi, H., Piyapattanakorn, S., Watabe, S. Cloning of glutamine synthetase gene from abdominal muscle of kuruma shrimp Marsupenaeus japonicus and its expression profile. Fisheries Sci., 89(2), 215-2013222(2023).
25. Aneesh, P. T., Ohtsuka, S., Kondo, Y., Helna, A. K. Two new genera and species of the parasitic copepod family Chondracanthidae Milne Edwards, 1840 (Copepoda: Cyclopoida) from deep-sea fishes off Suruga Bay, Japan. Acta Parasitologica (2024).
26. Aneesh, P.T., Helna, A.K., Ohtsuka, S. Elthusa phoenix sp. nov. (Crustacea: Isopoda: Cymothoidae), a branchial fish parasitic isopod, from the sohachi flounder, Cleisthenes pinetorum Jordan and Starks, 1904 from off Sado Island, Japan. Mar. Biol. Res. (2024).
27. Kondo, Y., Ohtsuka, S., Nawata, M., Nishida, Y., Komeda, S., Iwasaki, S., Aneesh, P. T., Venmathi Maran, B. A. Habitat shift of adult Caligus undulatus (Copepoda: Siphonostomatoida: Caligidae) from the host fish to the plankton in response to host behavior. Dis. Aquat. Org. (2024).
28. Yumura, N., Nishikawa, J., Ohtsuka, S. A new species and a new genus of the family Pennellidae (Copepoda: Siphonostomatoida) parasitic on North Pacific lightfish Maurolicus japonicus (Actinopterygii: Stomiiformes: Sternoptychidae) collected from Suruga Bay, Japan. Species Diversity (2024).
29. Tokuda, Y., Kawakita, S., Sentoku, A., Ezaki, Y., Tanaka, N., Nagasawa, S., Nakaguchi, N., Yamaguchi, S., Kondo, Y., Ohtsuka, S. Influence of sipunculan (peanut worm) activity on orifice formation in scleractinian Heterocyathus for adaptation to soft substrates. Sci. Rep. (2024).
30. Norshida, I., Nishida, Y., Ohtsuka, S., Boxshall, G. A., Bernot, J. P. First record of Caligus dussumieri Rangnekar, 1957 (Copepoda, Siphonostomatoida, Caligidae) from Malaysia, with notes on caligids found from Malaysia and on host-specificity of caligids on lutjanid fishes. Biodivers. Data J., 12, e116598 (2024).
31. Helna, A. K., Aneesh, P. T., Kumar, A. B., Ohtsuka, S., Venmathi Maran, B. A. Site-specific parasitism of crustaceans on the black pomfret, Parastromateus niger (Carangidae) from Indian Waters. Thalassas, 1-12 (2024).
32. Komeda, S., Ohtsuka, S., Huys, R. A new genus and species of oceanic planktonic Tisbidae (Crustacea , Copepoda , Harpacticoida ) with enlarged modified eyes. ZooKeys, 1191, 307-338 (2024).
33. Fujita, H., Aneesh, P. T., Kawai, K., Kiitamura, S-I., Shimomura, M., Umino, T., Ohtsuka, S. Redescription and molecular characterization of Mothocya parvostis Bruce, 1986 (Crustacea: Isopoda: Cymothoidae) parasitic on Japanese halfbeak, Hyporhamphus sajori (Temminck & Schlegel, 1846) (Hemiramphidae) with Mothocya sajori Bruce, 1986 placed into synonymy. Zootaxa, 5277(2), 259-286 (2023).
34. Piasecki, W., Venmathi Maran, B. A., Ohtsuka, S. Are we ready to get rid of the terms “chalimus” and” preadult” in the caligid(Crustacea: Copepoda: Caligidae) life cycle nomenclature?. Pathogens, 12(3), 460 (2023).
35. Ohtsuka, S. An observation of the predatory behavior of the pygmy woodpecker Dendrocopos kizuki (Temminck, 1836) on the aphid Schlechtendalia chinensis (Bell, 1851) within the galls of Rhus javanica var. chinensis (Mill.) T. Yamaz., with notes on the predation of wild birds on colonial hemipterans in Japan. Bull. Hiroshima Univ. Museum (2023) (in Japanese).
36. 大塚攻、近藤裕介. 我々はどこに行こうとしているのか?:竹原市「ハチの干潟」のカブトガニの保全活動を振り返って. 広島生物, 45, 1-10 (2024).
37. Sato, H., Sakai, Y., Kuwamura, T. Cleaner fish coloration does not always reduce predation risk: testing the effect of protective mimicry in the false cleanerfish, Aspidontus taeniatus . Biol. J. Linn. Soc., blad163 (2023).
38. Oyama, T., Sonoyama, T., Kasai, M., Sakai, Y., Sunobe, T. Bidirectional sex change and plasticity of gonadal phases in the goby Lubricogobius exiguous . J. Fish. Biol., 102(5), 1079-1087 (2023).
39. Oyama, T., Abe, K., Sunobe, T., Sakai, Y. Protogynous sexuality and gonad structures in the coral-dwelling goby Pleurosicya mossambica . Ichthyol. Res., 71, 174-179 (2024).
40. Hosoi, T., Kato, A. Effects of seawater temperature and irradiance on the growth of sporelings of Amphiroa cf. zonata and Corallina berteroi (Corallinales, Rhodophyta) in Japan. Phycologia 62(6), 585-2013592 (2023).
41. Hoshino, M., Wakeman, K.C., Kato, A., Kitayama, T., Sherwood, A.R., Uwai, S., Kogame, K. Taxonomic study of the polyphyletic Dudresnaya (Dumontiaceae, Florideophyceae) with the descriptions of D. ryukyuensis sp. nov. and two new genera, Himehibirhodia and Nudresdaya . Phycol. Res. (accepted).
42. Hirashima, S., Amimoto, T., Iwamoto, Y., Takeda, K. Photodegradation of the insecticide fipronil in aquatic environments: photodechlorination processes and products. Environ. Sci. Pollut. Res., 30, 89877-8988 (2023).
43. Tada, Y., Marumoto, K., Iwamoto, Y., Takeda, K., Sakugawa, H. Distribution and phylogeny of mercury methylation, demethylation, and reduction genes in the Seto Inland Sea of Japan. Mar. Pollut. Bull., 186, 114381 (2023).
44. Arimoto, A., Nishitsuji, K., Hisata, K., Satoh, N., Tagawa, K. Transcriptomic evidence for Brachyury expression in the caudal tip region of adult Ptychodera flava (Hemichordata). Dev. Growth Differ., 65(8), 470-480 (2023).
45. Hikosaka-Katayama, T., Okabe, K., Mishima, A., Matsuura, A., Arimoto, K., Shinohara, M., Hikosaka, A. Symbiotic algae of acoel species in the Seto Inland Sea and symbiont selectivity in the hosts. Zoolog. Sci. (2024).
46. Nakamura, H., Hongo, K., Matsuzaka, K., Nagasaki, R., Ikeda, S., Shioji, T., Shimizu, N., Tsubota, H.. Checklist of planted trees on the Higashi-hiroshima Campus of Hiroshima University, Hiroshima Prefecture, SW Japan. Bull. Hiroshima Univ. Museum, 14, 75-92 (2023) (in Japanese).
47. Inoue, Y., Nakahara-Tsubota, M., Ogiso-Tanaka, E., Tsubota, H. Complete chloroplast and mitochondrial genomes of Ditrichum rhynchostegium Kindb. (Ditrichaceae, Bryophyta). Mitochondrial DNA Part B, 8(3), 383-388 (2023).
48. Phan, Q. C., Koyama, Y., Sheng, Z. P., Uchida, S., Kamimoto, Y., Nakahara-Tsubota, M.,Tsubota, H. Vascular plant flora of the area surrounding the Dondon-gawa River on Miyajima Island, Hiroshima Prefecture, SW Japan, before the proposed construction of an erosion-control dam. Studies of the Itsukushima Island, 19, 1-15 (2023) (in Japanese).
49. Oyake, Y., Phan, Q. C., Koyama, Y., Kono, R., Kamimoto, Y., Nakahara-Tsubota, M.,Tsubota, H. Vegetation on the embankment slope two years after revegetation in consideration of local biodiversity of Miyajima Island, J. Jpn. Soc. Reveget. Tech., 49(1), 27-32 (2023) (in Japanese).
50. Park, D. S., Feng, X., Akiyama, S., Ardiyani, M., Avendaño, N., Barina, Z., Bärtschi, B., Belgrano, M., Betancur, J., Bijmoer, R., Bogaerts, A., Cano, A., Danihelka, J., Garg, A., Giblin, D. E., Gogoi, R., Guggisberg, A., Hyvärinen, M., James, S. A., Sebola, R. J., Katagiri, T., Kennedy, J. A., Komil, T. S., Lee, B., Lee, S. M. L., Magri, D., Marcucci, R., Masinde, S., Melnikov, D., Mráz, P., Mulenko, W., Musili, P., Mwachala, G., Nelson, B. E., Niezgoda, C., Sepúlveda, C. N., Orli, S., Paton, A., Payette, S., Perkins, K. D., Ponce, M. J., Rainer, H., Rasingam, L., Rustiami, H., Shiyan, N. M., Bjorå, C. S., Solomon, J., Stauffer, F., Sumadijaya, A., Thiébaut, M., Thiers, B. M., Tsubota, H., Vaughan, A., Virtanen, R., Whitfeld, T. J. S., Zhang, D. Zuloaga F. O., Davis, C. C. The colonial legacy of herbaria. Nat. Hum. Behav. (2023).
51. Phan, Q. C., Nagasaki, R., Inoue, Y., Tsubota, H. The complete chloroplast genome of Callicarpa dichotoma (Lour.) K.Koch (Lamiaceae). Mitochondrial DNA Part B, 8(11), 1174-1178 (2023).
52. Handa, S., Nakahara-Tsubota, M., Shoda, I., Mizobuchi, A., Nakano, T., Tsubota, H. Trentepohlia brevicellulis comb. et stat. nov. (Trentepohliaceae, Ulvophyceae) found in Japan. Phycol. Res., 72(1), 12-26 (2024).
53. Nagasaki, R., Uchida, S., Yamaguchi, T., Furuki, T., Tsubota, H., Inoue, Y. Complete chloroplast genome of Frullania muscicola Steph. (Frullaniaceae, Marchantiophyta). Hikobia, 19(1), 1–9 (2023).
54. Nakamura, H., Koyama, Y., Phan, Q. C., Nakahara-Tsubota, M.,Tsubota, H. A note on vascular plants in Miyajima Island, Hiroshima Prefecture, SW Japan: Carpinus japonica and C. laxiflora (Betulaceae), and Lonicera affinis (Caprifoliaceae). Hikobia, 19(1), 37-47 (2023) (in Japanese).
55. Kanatani, J-i., Fujiyoshi, S., Isobe, J., Kimata, K., Watahiki, M., Maenishi, E., Izumiyama, S., Amemura-Maekawa, J., Maruyama, F., Oishi, K. Correlation between bacterial microbiome and Legionella species in water from public bath facilities by 16S rRNA gene amplicon sequencing. Microbiol. Spectr., e03459-23 (2024).
56. Ruiz-Gil, T., Rilling, J. I., Campos, M., Carrazana, E., Fujiyoshi, S., Maruyama, F., Tanaka, D., Sakatoku, A., Noda, J., Acuña J. J., Jorquera, M. A. Airborne bacterial communities associated with particulate matter in Temuco (Chile), one of the most air-polluted cities in South America. Aerobiologia, 39, 457-476 (2023).
57. Saibu, S., Perera, I. U., Suzuki, S., Rodó, X., Fujiyoshi, S., Maruyama, F. Resistomes in freshwater bioaerosols and their impact on drinking and recreational water safety: A perspective. Environ. Int., 183, 108377 (2024).
58. Carrazana, E., Ruiz-Gil, T., Fujiyoshi, S., Tanaka, D., Noda, J., Maruyama, F., Jorquera, M. A. Potential airborne human pathogens: A relevant inhabitant in built environments but not considered in indoor air quality standards. Sci. Total Environ., 901, 165879 (2023).
59. Fujiyoshi, S., Yarimizu, K., Fuenzalida, G., Campos, M., Rilling, J. I., Acu ñ a, J. J., Miranda, P. C., Cascales, E. K., Perera, I., Espinoza-González, O., Guzmán, L., Jorquera, M. A., Maruyama, F. Monitoring bacterial composition and assemblage in the Gulf of Corcovado, southern Chile: Bacteria associated with harmful algae. Curr. Res. Microb. Sci., 4, 100194 (2023).
60. Hou, J., Fujiyoshi, S., Perera, I. U., Nishiuchi, Y., Nakajima, M., Ogura, D., Yarimizu, K., Maruyama, F. Perspectives on Sampling and New Generation Sequencing Methods for Low-Biomass Bioaerosols in Atmospheric Environments. J. Indian. Inst. Sci., 12, 1-11 (2023).
61. Gajardo, G., Moron-Lopez, J., Vergara, K., Ueki, S., Guzman, L., Espinoza-Gonzalez, O., Sandoval, A., Fuenzalida, G., Murillo, A. A., Riquelme, C., Cameron, H., Nagai, S., Maruyama, F., Fujiyoshi, S., Yarimizu, K., Perera, I., Kawai, M., Avila, A., Larama, G., Gonzalez, M. A., Rilling, J. I., Campos, M., Ruiz-Gil, T., Duran-Vinet, B., Acuna, J. J., Jorquera, M. A. The holobiome of marine harmful algal blooms (HABs): A novel ecosystem-based approach for implementing predictive capabilities and managing decisions. Environ. Sci. Poli., 143, 44-54 (2023).
62. Fujiyoshi, S., Yarimizu, K., Perera, I., Abanto, M., Jorquera, M., Maruyama, F. Learning from mistakes: challenges in finding holobiont factors from environmental samples and the importance of methodological consistency. Curr. Opin. Biotechnol. 80, 102897 (2023).
63. 丸山 史人. チリにおける赤潮発生と被害、予察の現場. 月刊養殖ビジネス, 60(9), 41-46 (2023).
64. Koizumi, Y., Maruyama, F. Editorial: Ecology, environment, and human microbiome interaction with infection. Front. Public Health, 11, 1217927 (2023).
65. 侯 建建、内 由紀子、藤吉 奏、丸山 史人、中嶋 麻起子、小椋 大輔. 室内バイオエアロゾルと構成微生物のリアルタイム測定の現状. クリーンテクノロジー (Clean Technology), 33(3), 57-61 (2023).
66. Komatsu, T., Ohya, K., Ota, A., Nishiuchi, Y., Yano, H., Matsuo, K., Odoi, J. O., Suganuma, S., Sawai, K., Hasebe, A., Asai, T., Yanai, T., Fukushi, H., Wada, T., Yoshida, S., Ito, T., Arikawa, K., Kawai, M., Ato, M., Baughn, A. D., Maruyama, F. Unique genomic sequences in a novel Mycobacterium avium subsp. hominissuis lineage enable fine scale transmission route tracing during pig movement. One Health, 16, 100559 (2023).
67. Dutta, K., Shityakov, S., Maruyama, F. DSF inactivator RpfB homologous FadD upregulated in Bradyrhizobium japonicum under iron limiting conditions. Sci. Rep., 13(1), 8701 (2023).
68. Morita, D., Arai, H., Isobe, J., Maenishi, E., Kumagai, T., Maruyama, F., Kuroda, T. Whole-Genome and Plasmid Comparative Analysis of Campylobacter jejuni from Human Patients in Toyama, Japan, from 2015 to 2019. Microbiol. Spectr., 11(1), e02659-22 (2023).
69. El-Halmouch, Y., Ibrahim, H. A. H., Dofdaa, N. M., Mabrouk, M. E. M., El-Metwally, M. M., Nehira, T., Ferji, K., Ishihara, Y., Matsuo, K., Ibrahim, M. I. A.Complementary spectroscopy studies and potential activities of levan-type fructan produced by Bacillus paralicheniformis ND2. Carbohydr. Polym., 311, 120743 (2023).
70. Aoyagi, H., Nakabayashi, M., Yamada, T. Newly found leaf arrangement to reduce self-shading within a crown in Japanese monoaxial tree species. J. Plant Res., 137, 203-213 (2024).
71. Mon, S. M., Okuda, T., Yamada, T., Thant, A. M., Shin, T., Chew, W. C., Mandal, MSH., Shigematsu, C. Can commercialization of non-timber forest product (NTFP) reduce deforestation in Myanmar?. Tropics, 31, 81-93 (2023).
72. Okuda, T., Yamada, T., Hiratsuka, M., Fujikawa, K., Ishizuka, M., Hlaing, E. E. S., Shin, T. Introduction to “Role of Non-Timber Forest Products (NTFP) for local benefit and forest resource sustainment in Myanmar”. Tropics, 31, 65-67 (2023).
73. Putra, P. S., Achmad, A., Yamada, T., Ngakan, P. O. Seasonal diversity and distribution of decomposing macrofungi in three forest communities: why do they differ?. IOP Conf. Ser.: Earth Environ. Sci. 1230, 012059 (2023).
74. Putra, P. S., Achmad, A., Yamada, T., Ngakan, P. O. Seasonal Decomposition Rates of Broadleaf and Conifer Wood Litter in Far Eastern Tropical Forest Communities. Int. J. For. Res., 2023, 9677809 (2023).
75. Putra, P. S., Achmad, A., Yamada, T., Ngakan, P. O. Seasonal litter production patterns in three tropical forests in Sulawesi, Indonesia: Implications for managing secondary forests. Biodiversitas J. Biol. Divers., 24(2) (2023).
76. Putra, P. S., Yamada, T., Achmad, A., Nasri, N., Hamzah, A. S., Ngakan, P. O. Differences in the vegetation dynamic patterns of three tropical secondary forests in South Sulawesi, Indonesia. Biodiversitas J. Biol. Divers., 29 (2023).
77. Yamada, T., Imada, K., Aoyagi, H., Nakabayashi, M. Does monocarpic Phyllostachys nigra var. henonis regenerate after flowering in Japan? Insights from 3 years of observation after flowering. Plos One, 18, e0287114 (2023).
78. Yamada, T., Oshige, C., Nakabayashi, M., Okuda, T., Moe, A. Z., Hlaing, E. E. S. Spatial patterns of Cephalostachyum pergracile Munro in a mixed deciduous forest in Myanmar. Tropics, 33(1), 1-8 (2024).
79. Yamada, T., Oshige, C., Nakabayashi, M., Okuda, T., Moe, A. Z., Hlaing, E. E. Spatial association of bamboos with trees in a commercial tree plantation forest in Myanmar. J. Trop. Ecol., 39, e31 (2023).
80. Tajima, T., Kawaguchi, S., Matsutani, T., Hida, A., Kato, J. Acclimation of Microbial Consortia to Ammonia and Salt in Methane Fermentation. Fermentation, 10(2), 98 (2024).
81. Hamilton, D. S., Baker, A. R., Iwamoto, Y., Gassó, S., Bergas-Masso, E., Deutch, S., Dinasquet, J., Kondo, Y., Llort, J., Myriokefalitakis, S., Perron, M. M. G., Wegmann, A., Yoon, J-E. An aerosol odyssey: Navigating nutrient flux changes to marine ecosystems. Elementa: Sci. Anthropocene, 11, 00037 (2023).
82. Nagashima, K., Kawakami, H., Sugie, K., Fujiki, T., Nishioka, J., Iwamoto, Y., Takemura, T., Miyakawa, T., Taketani, F., Noguchi,A. M. Asian dust-deposition flux to the subarctic Pacific estimated using single quartz particles. Sci. Rep., 13, 15424 (2023).
83. Ueda, S., Iwamoto, Y., Taketani, F., Liu, M., and Matsui, H. Morphological features and water solubility of iron in aged fine aerosol particles over the Indian Ocean. Atmos. Chem. Phys., 23, 10117-10135 (2023).
84. Kodama, T., Iwamoto, Y. Characteristics of insoluble spherical particles in atmospheric deposition before and after blast furnace shutdown at steelworks. Earozoru Kenkyu, 38, 33-38 (2023) (in Japanese).
85. Ono, K., Iwata, A., Fukuma, Y., Iwamoto, Y., Hamasaki, K., Matsuki, A. Characterization of adhesivity of organic enriched sea spray aerosols by atomic force microscopy. Atmos. Environ., 294, 119468 (2023).
86. Dobashi, T., Miyazaki, Y., Tachibana, E., Takahashi, K., Horii, S., Hashihama, F., Yasui-Tamura, S., Iwamoto, Y., Wong, S.-K., Hamasaki, K. Marine nitrogen fixation as a possible source of atmospheric water-soluble organic nitrogen aerosols in the subtropical North Pacific. Biogeosciences, 20, 439-449 (2023).
87. Ito, A., Miyazaki, Y. Taketani, F., Iwamoto, Y., Kanaya, Y. Marine aerosol feedback on biogeochemical cycles and the climate in the Anthropocene: lessons learned from the Pacific Ocean. Environ. Sci.: Atmos., 3, 782-798 (2023).
88. Mizuta, H., Morozumi, Y., Watanabe, M., Ohta, S., Ômura, H. Role of trisaccharides in larval secretion of Lycaeides argyrognomon butterfly on ant attendance. J. Insect Physiol., 150, 104558 (2023).
89. Saito, K., Ohta, S., Ômura, H. Characterization of volatile compounds in males of the skipper butterfly Daimio tethys (Lepidoptera:Hesperiidae). Appl. Entomol. Zool., 58, 171-179 (2023).
90. Matsunaga, C., Kanazawa, N., Takatsuka, Y., Fujii, T., Ohta, S., Ômura, H. Polyhydroxy acids as fabaceous plant components induce oviposition of the common grass yellow butterfly, Eurema mandarina . J. Chem. Ecol., 49, 67-76 (2023).
91. Hossain, N., Igawa, T., Suzuki, M., Tazawa, I., Nakao, Y., Hayashi, T., Suzuki, N., Ogino, H. Phenotype-genotype relationships in Xenopus sox9 crispants provide insights into campomelic dysplasia and vertebrate jaw evolution. Dev. Growth Differ., 65(8), 481-497 (2023).
92. Kitamura, K., Yamamoto, T., Ochi, H., Suzuki, M., Suzuki, N., Igawa, T., Yoshida, T., Futakuchi, M., Ogino, H., Michiue, T. Identification of tumor-related genes via RNA sequencing of tumor tissues in Xenopus tropicalis . Sci. Rep., 13(1), 13214 (2023).
93. Lau, Q., Igawa, T., Kosch, T. A., Dharmayanthi, A. B., Berger, L., Skerratt, L. F., Satta, Y. Conserved Evolution of MHC Supertypes among Japanese Frogs Suggests Selection for Bd Resistance. Animals, 13(13), 2121 (2023).
94. Nishimura, T., Ishida, T., Funabashi, H., Hirota, R., Ikeda, T., Kuroda, A. Detection of fine asbestos fibers using fluorescently labeled asbestos-binding proteins in talc. J. Hazard. Mater. Adv., 11, 1255582 (2023).
95. De Rose, S., Kuga, Y., Sillo, F., Fochi, V., Sakamoto, N., Calevo, J., Perotto, S., Balestrini, R. Plant and fungal gene expression coupled with stable isotope labeling provide novel information on sulfur uptake and metabolism in orchid mycorrhizal protocorms. Plant J., 116(2), 416-431 (2023).
96. Yawata, S., Noda, K., Shimomura, A., Oda,A., Arakawa, S., Hachiya, H., Kuroda, A. Development of a bioluminescence detection method for endotoxin and its application to dialysate analysis. BUNSEKI KAGAKU, 72(7, 8), 289-298 (2023) (in Japanese).
97. Yamaguchi, T., Yokota, M., Jinnai, M., Minh, D. T. N., Hoang, O. N., Le Thi, H., Thanh, P. N., Hoang Hoai, P., Nguyen Do, P., Van, C. D., Motooka, D., Nakamura, S., Kawahara, R., Kumeda, Y., Hase, A., Nakayama, T. Detection of chromosome-mediated bla NDM-1-carrying Aeromonas spp. in the intestinal contents of fresh water river fish in Ho Chi Minh City, Vietnam. Mar. Pollut. Bull., 198, 115812 (2024).
98. Nakayama, T., Yamamoto, S., Ohata, N., Yamaguchi, T., Jinnai, M., Minh, D. T. N., Hoang, O. N., Le Thi, H., Thanh, P. N., Hoang Hoai, P., Nguyen Do, P., Van, C. D., Kumeda, Y., Hase, A. IncHI2 Plasmid Encoding bla CTX-M-55 and mcr-1.1 in Salmonella enterica SE20-C72-2 and Escherichia coli EC20-C72-1 Isolates from the Edible River Fish Anabas testudineus. Microbiol. Resour. Announc., 12(7), e00149-23 (2023).
99. Nakayama, T., Yamamoto, S., Ohata, N., Yamaguchi, T., Jinnai, M., Minh, D. T. N., Hoang, O. N., Le Thi, H., Thanh, P. N., Hoang Hoai, P., Nguyen Do, P., Van, C. D., Kumeda, Y., Hase, A. Common presence of plasmid encoding blaCTX-M-55 in extended-spectrum β -lactamase-producing Salmonella enterica and Escherichia coli isolates from the same edible river fish. J. Microorg. Control, 28, 49-56 (2023).
100. Nakayama, T., Yamaguchi, T., Minh, D. T. N., Hoang, O. N., Le Thi, H., Thanh, P. N., Hoang Hoai, P., Jinnai, M., Nguyen Do, P., Van, C. D., Kumeda, Y., Hase, A. Carbapenem-Resistant Citrobacter freundii and Escherichia coli Harboring a Common IncC-Type Plasmid Encoding IS26 Upstream of blaNDM-1, sul1, aph(3 ′ )-VI, and qacE Isolated from Edible Mastacembelidae Fish. Microbiol. Resour. Announc., 12(5), e01344-22 (2023).
101. Nakayama, T., Yamaguchi, T., Jinnai, M., Kumeda, Y., Hase, A. ESBL-producing Vibrio vulnificus and V. alginolyticus harbour a plasmid encoding ISEc9 upstream of blaCTX-M-55 and qnrS2 isolated from imported seafood. Arch. Microbiol., 205(6), 241(2023).
102. Nakayama, T., Soga, K. Simple and quick detection of extended-spectrum β-lactamase and carbapenemase-encoding genes using isothermal nucleic acid amplification techniques. J. Microorg. Control, 28(4), 145-152 (2023).
103. Hernández, J. R. E., Moghadam, S. T., Sharifi, A., Lombardi, P. Cities in the times of COVID-19: Trends, impacts, and challenges for urban sustainability and resilience. J. Clean. Prod., 432(20), 139735 (2023).
104. Nazir, L., Sharifi, A. An analysis of barriers to the implementation of smart grid technology in Pakistan. Renew. Energy, 220, 119661 (2024).
105. Aboagye, P. D., Sharifi, A. Urban climate adaptation and mitigation action plans: A critical review. Renew. Sustain. Energy Rev., 189, 113886 (2024).
106. Alidadi, M., Sharifi, A. Beyond the blame game: Unraveling the complex relationship between density and COVID-19 through a systematic literature review. Cities, 141, 104519 (2023).
107. Leal Filho, W., Weissenberger, S., Luetz, J. M., Sierra, J., Simon Rampasso, I., Sharifi, A., Anholon, R., Eustachio, J. H. P. P., Kovaleva, M. Towards a greater engagement of universities in addressing climate change challenges. Sci. Rep., 13, 19030 (2023).
108. Candelaria, J. L., Sharifi, A., Simangan, D., Tabosa, R. M. R. A critical analysis of selected global sustainability assessment frameworks: Toward integrated approaches to peace and sustainability. World Dev. Perspect. 32, 100539 (2023).
109. Aghaloo, K., Sharifi, A. A GIS-based agroecological model for sustainable agricultural production in arid and semi-arid areas: The case of Kerman Province, Iran. Curr. Res. Environ. Sustain., 6, 100230 (2023).
110. Torabi, Z. A., Pourtaheri, M., Hall, C. M., Sharifi, A., Javidi, F. Smart tourism technologies, revisit intention, and word-of-mouth in emerging and smart rural destinations. Sustainability, 15(14), 10911 (2023).
111. Sharifi, A. Resilience of urban social-ecological-technological systems (SETS): A review. Sustain. Cities Soc., 99, 104910. (2023).
112. Chenary, K., Soltani, A., Sharifi, A. Street network patterns for mitigating urban heat islands in arid climates. Int. J. Digital Earth, 16(1), 3145-3161 (2023).
113. Fortuna, S., Setiawan, R. P., Sharifi, A. Do spatial and sociodemographic factors affect the transmission pattern of COVID-19? Evidence from Surabaya City, Indonesia. Int. J. Disaster Risk Reduc., 96(1), 103900 (2023).
114. Alidadi, M., Sharifi, A., Murakami, D. Tokyo's COVID-19: An urban perspective on factors influencing infection rates in a global city. Sustain. Cities Soc., 97, 104743 (2023).
115. Rahmani, N., Sharifi, A. Comparative Analysis of the Surface Urban Heat Island (SUHI) Effect Based on the Local Climate Zone (LCZ) Classification Scheme for Two Japanese Cities, Hiroshima, and Sapporo. Climate, 11(7), 142 (2023).
116. Kazungu, R. K., Sharifi, A. Investigating Risks to the Implementation of the Great Equatorial Landbridge (GELB) Highway Project across Africa. Sustainability, 15(14), 10905 (2023).
117. Paudel, J., Sharifi, A., Khan, G. D. What are the drivers of sustainable energy transition? Insights from an empirical analysis of household preferences for electric induction cooking in Nepal. J. Clean. Prod., 417(10), 138021 (2023).
118. Sobhaninia, S., Amirzadeh, M., Lauria, M., Sharifi, A. The relationship between place identity and community resilience: Evidence from local communities in Isfahan, Iran. Int. J. Disaster Risk Reduc., 90, 103675 (2023).
119. Arvin, M., Beiki, P., Hejazi, S. J., Sharifi, A., Atashafrooz, N. Assessment of infrastructure resilience in multi-hazard regions: A case study of Khuzestan Province. Int. J. Disaster Risk Reduc., 88(1), 103601 (2023).
120. Aghaloo, K., Ali, T., Chiu, Y. R., Sharifi, A. Optimal site selection for the solar-wind hybrid renewable energy systems in Bangladesh using an integrated GIS-based BWM-fuzzy logic method. Energy Convers. Manag., 283(1), 116899 (2023).
121. He, B. J., Wang, W., Sharifi, A., Liu, X. Progress, knowledge gap and future directions of urban heat mitigation and adaptation research through a bibliometric review of history and evolution. Energy Build., 287(15), 112976 (2023).
122. Leal Filho, W., Nagy, G. J., Setti, A. F. F., Sharifi, A., Donkor, F. K., Batista, K., Djekic, I. Handling the impacts of climate change on soil biodiversity. Sci. Total Environ., 869(15), 161671 (2023).
123. Watanabe, K., Fujita, M., Okamoto, K., Yoshioka, H., Moriwaki, M., Tagashira, H., Awazu, A., Yamamoto, T., Sakamoto, N. The crucial role of CTCF in mitotic progression during early development of sea urchin. Dev. Growth Differ., 65(7), 371-428 (2023).
124. Awazu, A., Takemoto, D., Watanabe, K., Sakamoto, N. Possibilities of skin coat color-dependent risks and risk factors of squamous cell carcinoma and deafness of domestic cats inferred via RNA-seq data. Genes Cells, 28(12), 893-905 (2023).
125. Zheng, T. X., Long, D. G., Shimamura, M. Range extension of Marchantia formosana (Marchantiaceae, Marchantiophyta), with an updated key to Marchantiaceae taxa in East Asia. Phytotaxa, 612(1), 93-98 (2023).
126. Newman, D., Young, L. E., Waring, T., Brown, L., Wolanska, K. I., MacDonald, E., Charles-Orszag, A., Goult, B. T., Caswell, P. T., Sakuma, T., Yamamoto, T., Machesky, L. M., Morgan, M. R., Zech, T. 3D matrix adhesion feedback controls nuclear force coupling to drive invasive cell migration. Cell Rep., 42, 113554 (2023).
127. Ezaki, R., Sakuma, T., Kodama, D., Sasahara, R., Shiraogawa, T., Ichikawa, K., Matsuzaki, M., Handa, A., Yamamoto, T., Horiuchi, H. Transcription activator-like effector nuclease-mediated deletion safely eliminates the major egg allergen ovomucoid in chickens. Food Chem. Toxicol., 175, 113703 (2023).
128. Takemura, K., Kato, J., Kato, S., Fujii, T., Wada, K., Iwasaki, Y., Aoi, Y., Matsushika, A., Morita, T., Murakami, K., Nakashimada, Y. Enhancing acetone production from H2 and CO2 using supplemental electron acceptors in an engineered Moorella thermoacetica . J. Biosci. Bioeng., 136(1), 13-19 (2023).
129. Kamada, S., Wakabayashi, R., Naganuma, T. Phylogenetic revisit to a review on predatory bacteria. Microorganisms, 11(7), 1673(2023).
130. Younes, A., Saito, H., Tani, S., Ikeo, R., Kawai, K. Metagenomic analysis of gut microbiome from tilapia species across several regions in Japan. Aquaculture, 576(15), 739809 (2023).
131. Khalfan, A. W. M., Tani, S., Aoki, Y., Younes, A., Saito, H. Host selection and potential predation in the host-parasite interaction between the isopod Tachaea chinensis and freshwater host species. Int. J. Parasitol. Parasites Wildl., 21, 59-68 (2023).
132. Khalfan, A. W. M., Tani, S., Younes, A., Saito, H. Host size selection in the ectoparasite Tachaea chinensis (Isopoda: Corallanidae) under laboratory conditions. Zool. Sci., 40(3), 197-202 (2023).
133. Islam, M. M., Umehara, T., Tsujita, N., Koyago, M., Shimada, M. Treatment with cholesterol just after thawing maintains the fertility of bull sperm. Mol. Hum. Reprod., 29(9), gaad031 (2023).
134. Tonai, S., Nakanishi, T., Yamaoka, M., Okamoto, A., Shimada, M., Yamashita, Y. Pre-culture with transferrin-Fe3+ before in vitro maturation improves the developmental competence of porcine oocytes matured in vitro. Reprod. Med. Biol., 22(1), e12529(2023).
135. Ohara, S., Yano, R., Furuya, K., Sato, T., Ikeda, S., Koike, K. The effects of sea-bottom plowing on phytoplankton assemblages: a case study of northern Hiroshima Bay, the Seto Inland Sea of Japan. Front. Mar. Sci., 10, 1222810 (2023).
136. Shimazaki, H., Nakamura, K., Ono, A., Segawa, O., Sawakami, K., Koizuka, M., Hirayama, M., Hori, K., Tajima, H., Kuno, A. Auto-Lectin Dotcoding by Two Octopuses: Rapid Analysis of Fluorescence-Labeled Glycoproteins by an 8-channel Fully- Automatic Bead Array Scanner with a Rolling-Circle Detector. Anal. Chem., 95(32), 11868-11873 (2023).
137. Nazmul, T., Lawal‐Ayinde, B. M., Morita, T., Yoshimoto, R., Higashiura, A., Yamamoto, A., Nomura, T., Nakano, Y., Hirayama, M., Kurokawa, H., Kitamura, Y., Hori, K., Sakaguchi, T. Capture and neutralization of SARS-CoV-2 and influenza virus by algaederived lectins with high-mannose and core fucose specificities. Microbiol. Immunol., 67(7), 334-344 (2023).
138. Yasukawa, S., Shirai, K., Namigata, K., Ito, M., Tsubaki, M., Oyama, H., Fujita, Y., Okabe, T., Suo, R., Ogiso, S., Watabe, Y., Matsubara, H., Suzuki, N., Hirayama, M., Sugita, H., Itoi, S. Tetrodotoxin detection in Japanese bivalves: Toxifcation status of scallops. Mar. Biotechnol., 25, 666-676 (2023).
139. Kunimatsu, S., Ohshimo, S., Muko, S., Kurota, H., Tomiyama, T. Spatiotemporal variation in the size structure of the chub mackerel, Scomber japonicus , over half a century in the East Asian Marginal Seas. Reg. Stud. Mar. Sci., 68(30), 103263 (2023).
140. Hashida, D., Tomiyama, T. Hatch date and early growth of juvenile Japanese jack mackerel Trachurus japonicus caught in the Uwa Sea. J. Fish. Biol., 103(3), 603-611 (2023).
141. Uehara, S., Fujinami, Y., Yamada, T., Tomiyama, T. Validation of otolith daily ring deposition and hatch date estimations in larval and juvenile Japanese flounder Paralichthys olivaceus . Fish. Res., 266, 106791 (2023).
142. Deguchi, W., Fujita, T., Yoneda, M., Kono, N., Yamamoto, M., Harada, K., Shoji, J., Tomiyama, T. Potential impact of predation by larval Spanish mackerel on larval anchovy in the central Seto Inland Sea, Japan. Deep Sea Res. Part II Top. Stud. Oceanogr., 208, 105272 (2023).
143. Kudoh, T., Midooka, A., Aida, S., Tomiyama, T. Interspecific differences in the vertical distribution patterns of Sebastes inermis and S.ventricosus . Fish. Bull., 121, 73-77 (2023).
144. Oguro, A., Fujiyama, T., Ishihara, Y., Kataoka, C., Yamamoto, M., Eto, K., Komohara, Y., Imaoka, S., Sakuragi, T., Tsuji, M., Shibata, E., Kotake, Y., Yamazaki, T. Maternal DHA intake in mice increased DHA metabolites in the pup brain and ameliorated MeHg-induced behavioral disorder. J. Lipid Res., 64(11), 100458 (2023).
145. Kawano, S., Itoh, K., Ishihara, Y. Suppressive Effects of Docosahexaenoic Acid Intake on Increased Seizure Susceptibility after Growth Due to Febrile Seizures in Infancy. Biol. Pharm. Bull., 46(9), 1184-1193 (2023).
146. Wang,Y. ,Okochi,H., Tani,Y. ,Hayami,H.,Minami,Y.,Katsumi,N., Takeuchi, M., Sorimachi, A., Fujii, Y., Kajino, M., Adachi,K., Ishihara, Y., Iwamoto, Y., Niida, Y. Airborne hydrophilic microplastics in cloud water at high altitudes and their role in cloud formation. Environ. Chem. Lett., 21, 3055-3062 (2023).
147. Tsuji, M., Hori, H., Koriyama, C., Tanaka, R., Isse, T., Ishihara, Y., Ishizuka, T., Hasegawa, W., Goto, M., Yatera, K., Kunugita, N., Kuwamura, M., Sakuragi, T., Yasumura, Y., Yamamoto, M., Ueno, S. The effect of mask fit test on the association between the concentration of metals in biological samples and the results of time-weighted average personal exposure: A study on Japanese male welders. J. Occup. Health, 65(1), e12399 (2023).
148. Kado, S. Y., Bein, K., Castaneda, A. R., Pouraryan, A. A., Garrity, N., Ishihara, Y., Rossi, A., Haarmann-Stemmann, T., Sweeney, C. A., Vogel, C. F. A. Regulation of IDO2 by the Aryl Hydrocarbon Receptor (AhR) in Breast Cancer. Cells, 12(10), 1433 (2023).
149. Amamoto, K., Inoue, Y., Aung, M. M., Yamaguchi, T. Morphological and molecular evaluation of Japanese Plicanthus RMSchust. (Anastrophyllaceae, Marchantiophyta). Taiwania, 68(2), 250-254 (2023).

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